{ "_id": "6a155a44acfb0bcc41d5f190", "Package": "sendigR", "Title": "Enable Cross-Study Analysis of 'CDISC' 'SEND' Datasets", "Version": "1.0.2", "Authors@R": "c(\nperson(\"Bo\", \"Larsen\", email = \"bolr@novonordisk.com\", role = \"aut\"),\nperson(\"Yousuf\", \"Ali\", email = \"md.ali@fda.hhs.gov\", role = \"aut\"),\nperson(\"Kevin\", \"Snyder\", email = \"kevin.snyder@fda.hhs.gov\", role = \"aut\"),\nperson(\"William\", \"Houser\", email = \"william.houser@bms.com\", role = \"aut\"),\nperson(\"Brianna\", \"Paisley\", email = \"paisley_brianna_meadow@lilly.com\", role = \"aut\"),\nperson(\"Cmsabbir\", \"Ahmed\", email = \"cmsabbir.ahmed@fda.hhs.gov\", role = \"aut\"),\nperson(\"Susan\", \"Butler\", email = \"susan.butler@fda.hhs.gov\", role = \"aut\"),\nperson(\"Michael\", \"Rosentreter\", email = \"michael.rosentreter@bayer.com\", role = \"aut\"),\nperson(\"Michael\", \"Denieu\", email = \"michael.denieu@labcorp.com\", role = \"aut\"),\nperson(\"Wenxian\", \"Wang\", email = \"wenxian.wang@bms.com\", role = c(\"cre\", \"aut\")),\nperson(given = \"BioCelerate\", role = \"cph\"))", "Description": "A system enables cross study Analysis by extracting and\nfiltering study data for control animals from 'CDISC' 'SEND'\nStudy Repository. These data types are supported: Body Weights,\nLaboratory test results and Microscopic findings. These\ndatabase types are supported: 'SQLite' and 'Oracle'.", "License": "MIT + file LICENSE", "URL": "https://github.com/phuse-org/sendigR", "BugReports": "https://github.com/phuse-org/sendigR/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "SystemRequirements": "Python(>=3.9.6)", "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev libuv1-dev\nlibssl-dev libpq-dev python3 libx11-dev zlib1g-dev", "Repository": "https://phuse-org.r-universe.dev", "Date/Publication": "2025-03-06 19:03:41 UTC", "RemoteUrl": "https://github.com/phuse-org/sendigr", "RemoteRef": "HEAD", "RemoteSha": "beb4a17066c4ec34e48f4c6aaced346d11111477", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-26 08:26:40 UTC", "User": "root" }, "Author": "Bo Larsen [aut],\nYousuf Ali [aut],\nKevin Snyder [aut],\nWilliam Houser [aut],\nBrianna Paisley [aut],\nCmsabbir Ahmed [aut],\nSusan Butler [aut],\nMichael Rosentreter [aut],\nMichael Denieu [aut],\nWenxian Wang [cre, aut],\nBioCelerate [cph]", "Maintainer": "Wenxian Wang ", "MD5sum": "81638501211c778549c14e571bf9b1b4", "_user": "phuse-org", "_type": "src", "_file": "sendigR_1.0.2.tar.gz", "_fileid": "ebe3880af88b97f343fb48ea042b4c20240e2019dbbcd0c44cafcd6285e1316b", "_filesize": 5150016, "_sha256": "ebe3880af88b97f343fb48ea042b4c20240e2019dbbcd0c44cafcd6285e1316b", "_created": "2026-05-26T08:26:40.000Z", "_published": "2026-05-26T08:31:00.901Z", "_distro": "noble", "_jobs": [ { "job": 77835823784, "time": 154, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7212332585" }, { "job": 77835823700, "time": 160, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7212334367" }, { "job": 77835823691, "time": 167, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7212328600" }, { "job": 77835823666, "time": 134, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7212316435" }, { "job": 77835161811, "time": 255, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7212282669" }, { "job": 77835823771, "time": 139, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7212327523" }, { "job": 77835823703, "time": 149, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7212330628" }, { "job": 77835823699, "time": 93, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7212312693" }, { "job": 77835823671, "time": 221, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7212353586" } ], "_buildurl": "https://github.com/r-universe/phuse-org/actions/runs/26440987109", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/phuse-org/sendigr", "_commit": { "id": "beb4a17066c4ec34e48f4c6aaced346d11111477", "author": "Yousuf Ali ", "committer": "Yousuf Ali ", "message": "getSubjRoute function postgres now work\n", "time": 1741287821 }, "_maintainer": { "name": "Wenxian Wang", "email": "wenxian.wang@bms.com", "login": "wangw106", "description": "", "uuid": 87377652 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "DBI", "role": "Imports" }, { "package": "RPostgres", "role": "Imports" }, { "package": "RSQLite", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "xfun", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "DescTools", "role": "Imports" }, { "package": "parsedate", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "shinydashboard", "role": "Imports" }, { "package": "htmltools", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "Hmisc", "role": "Imports" }, { "package": "haven", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "cicerone", "role": "Imports" }, { "package": "reticulate", "role": "Imports" }, { "package": "sjlabelled", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "logr", "role": "Suggests" }, { "package": "shinycssloaders", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "phuse-org", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 13, "_contributors": [ { "user": "yousuf28", "count": 174, "uuid": 31291716 }, { "user": "wangw106", "count": 77, "uuid": 87377652 }, { "user": "bripaisley", "count": 2, "uuid": 34136296 }, { "user": "bolrdk", "count": 1, "uuid": 65328944 } ], "_userbio": { "uuid": 5550620, "type": "organization", "name": "PHUSE ", "description": "PHUSE - An independent, not-for-profit organisation run by volunteers. the industry voice to regulatory agencies and standards orgs such as the FDA, EMA & CDISC" }, "_downloads": { "count": 197, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sendigR" }, "_devurl": "https://github.com/phuse-org/sendigr", "_searchresults": 6, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/sendigR.html", "manual.pdf" ], "_homeurl": "https://github.com/phuse-org/sendigr", "_realowner": "phuse-org", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2022-08-18" } ], "_exports": [ "dbCreateIndexes", "dbCreateSchema", "dbDeleteStudies", "dbImportOneStudy", "dbImportStudies", "disconnectDB", "execSendDashboard", "gen_vocab", "genericQuery", "getControlSubj", "getFindingsPhase", "getFindingsSubjAge", "getStudiesSDESIGN", "getStudiesSTSTDTC", "getSubjData", "getSubjRoute", "getSubjSex", "getSubjSpeciesStrain", "getTabColLabels", "initEnvironment", "standardize_file" ], "_help": [ { "page": "dbCreateIndexes", "title": "Create indexes in SEND database", "topics": [ "dbCreateIndexes" ] }, { "page": "dbCreateSchema", "title": "Create a SEND schema in an open and empty database", "topics": [ "dbCreateSchema" ] }, { "page": "dbDeleteStudies", "title": "Delete one or more studies in SEND database", "topics": [ "dbDeleteStudies" ] }, { "page": "dbImportOneStudy", "title": "Import SEND study data in SAS xport format into a SEND database from a single study folder", "topics": [ "dbImportOneStudy" ] }, { "page": "dbImportStudies", "title": "Import SEND study data in SAS xport format into a SEND database from a hierarchy study folders.", "topics": [ "dbImportStudies" ] }, { "page": "disconnectDB", "title": "Disconnect from the open database.", "topics": [ "disconnectDB" ] }, { "page": "execSendDashboard", "title": "Execute sendDashboard app", "topics": [ "execSendDashboard" ] }, { "page": "gen_vocab", "title": "Create json file for vocabulary mappings. Keys are synonyms and values are the CDISC Controlled Terminology Submission values. Vocabularies are defined by column values from the tab-delimited files.", "topics": [ "gen_vocab" ] }, { "page": "genericQuery", "title": "Execute database query and returns fetched rows.", "topics": [ "genericQuery" ] }, { "page": "getControlSubj", "title": "Extract a list of control animals for a list of studies", "topics": [ "getControlSubj" ] }, { "page": "getFindingsPhase", "title": "Extract a set of findings for a specified study phase - or just add phase for each animal.", "topics": [ "getFindingsPhase" ] }, { "page": "getFindingsSubjAge", "title": "Add the subject age at finding time - and optionally extract the set of findings within a specified range of age.", "topics": [ "getFindingsSubjAge" ] }, { "page": "getStudiesSDESIGN", "title": "Extract a list of SEND studies with a specified study design - or just add actual study design for each study.", "topics": [ "getStudiesSDESIGN" ] }, { "page": "getStudiesSTSTDTC", "title": "Extract a list of SEND studies with study start date within a specified interval - or just add actual study start date for each study", "topics": [ "getStudiesSTSTDTC" ] }, { "page": "getSubjData", "title": "Extract data from a subject level domain.", "topics": [ "getSubjData" ] }, { "page": "getSubjRoute", "title": "Extract the set of animals of the specified route of administration - or just add actual route of administration for each animal.", "topics": [ "getSubjRoute" ] }, { "page": "getSubjSex", "title": "Extract the set of animals of the specified sex - or just add the sex of each animal.", "topics": [ "getSubjSex" ] }, { "page": "getSubjSpeciesStrain", "title": "Extract the set of animals of the specified species and strain - or just add the species and strain for each animal.", "topics": [ "getSubjSpeciesStrain" ] }, { "page": "getTabColLabels", "title": "Get labels for columns in a data.table", "topics": [ "getTabColLabels" ] }, { "page": "initEnvironment", "title": "Initialize the environment.", "topics": [ 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